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Research – Whole-Genome Sequencing of Shiga Toxin-Producing Escherichia coli for Characterization and Outbreak Investigation
Shiga toxin-producing Escherichia coli (STEC) causes high frequencies of foodborne infections worldwide and has been linked to numerous outbreaks each year. Pulsed-field gel electrophoresis (PFGE) has been the gold standard for surveillance until the recent transition to whole-genome sequencing (WGS). To further understand the genetic diversity and relatedness of outbreak isolates, a retrospective analysis of 510 clinical STEC isolates was conducted. Among the 34 STEC serogroups represented, most (59.6%) belonged to the predominant six non-O157 serogroups. Core genome single nucleotide polymorphism (SNP) analysis differentiated clusters of isolates with similar PFGE patterns and multilocus sequence types (STs). One serogroup O26 outbreak strain and another non-typeable (NT) strain, for instance, were identical by PFGE and clustered together by MLST; however, both were distantly related in the SNP analysis. In contrast, six outbreak-associated serogroup O5 strains clustered with five ST-175 serogroup O5 isolates, which were not part of the same outbreak as determined by PFGE. The use of high-quality SNP analyses enhanced the discrimination of these O5 outbreak strains into a single cluster. In all, this study demonstrates how public health laboratories can more rapidly use WGS and phylogenetics to identify related strains during outbreak investigations while simultaneously uncovering important genetic attributes that can inform treatment practices.
Posted in Decontamination Microbial, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, microbial contamination, Microbial growth, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk, MLST, PFGE, Shigatoxin, STEC, STEC E.coli, WGS
Research – Natural Antimicrobials for Listeria monocytogenes in Ready-to-Eat Meats: Current Challenges and Future Prospects
Abstract
Listeria monocytogenes, an intra-cellular, Gram-positive, pathogenic bacterium, is one of the leading agents of foodborne illnesses. The morbidity of human listeriosis is low, but it has a high mortality rate of approximately 20% to 30%. L. monocytogenes is a psychotropic organism, making it a significant threat to ready-to-eat (RTE) meat product food safety. Listeria contamination is associated with the food processing environment or post-cooking cross-contamination events. The potential use of antimicrobials in packaging can reduce foodborne disease risk and spoilage. Novel antimicrobials can be advantageous for limiting Listeria and improving the shelf life of RTE meat. This review will discuss the Listeria occurrence in RTE meat products and potential natural antimicrobial additives for controlling Listeria.
Posted in Decontamination Microbial, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Listeria, Listeria monocytogenes, microbial contamination, Microbial growth, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk
Research – Multistate Outbreak of Salmonella Thompson Infections Linked to Seafood Exposure — United States, 2021
In July 2021, the Colorado Department of Public Health and Environment (CDPHE) laboratory identified a cluster of five Salmonella enterica serotype Thompson isolates related to one another within one allele difference, using whole genome multilocus sequence typing (wgMLST). These five isolates, submitted to the public health laboratory as is routine process for confirmatory testing of Salmonella, were highly related to those identified in a 2020 multistate investigation, during which traceback was conducted for sushi-grade tuna and salmon; a common supplier was not identified. The 2021 investigation commenced on August 5, 2021, with five patients living in Colorado, and one each in Missouri, Washington, and Wisconsin. During August–December 2021, CDC, CDPHE, public health and regulatory officials in several states, and the Food and Drug Administration (FDA) conducted epidemiologic, environmental, and laboratory investigations of this multistate outbreak of Salmonella Thompson. Isolates were genetically related to one another and to 2020 isolates within zero to one allele difference. Implicated seafood products were traced to a single seafood distributor, in which the outbreak strain was identified through environmental sampling, and in which inspection identified inadequate sanitization and opportunities for cross-contamination of raw fish. The distributor issued a voluntary recall of 16 seafood items with high potential for contamination and completed remediation actions. This outbreak illustrated the importance of effective cleaning and sanitizing procedures and implementation of controls. When multiple products are recalled during an outbreak investigation, collaboration between public health agencies and implicated facilities can help provide food safety information to restaurants, retailers, and consumers, and to ensure disposal of all recalled products.
Posted in Decontamination Microbial, food bourne outbreak, Food Illness, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Foodborne Illness, foodborne outbreak, foodbourne outbreak, Illness, microbial contamination, Microbial growth, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk, outbreak, Salmonella
Norway – BAMA recalls BABYLEAF MIX – Salmonella

Photo: BAMA
The product is sold at REMA 1000, NorgesGruppen’s chain concepts and Bunnpris throughout the country.
The recall applies to products with a use-by date of 25/05/2023 and 26/05/2023.
The product has been removed from store shelves and should be thrown away if you have it at home.
For possible compensation, contact BAMA .
Posted in food contamination, food handler, Food Hazard, Food Hygiene, Food Inspections, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Testing, Food Pathogen, Food Quality, food recall, Food Safety, Food Safety Alert, Food Safety Management, Food Safety Regulations, Food Testing, Salmonella
Italy – Snack & Vai MORTADELLA AND TARALLINI DISKS – Microbiological Risk
rand : Casa Modena
Name : Snack & Vai MORTADELLA AND TARALLINI DISKS
Reason for reporting : Recall due to microbiological risk
Date of publication : 18 May 2023
Documentation
USA – Dave’s Sushi to reopen after sickening 50 with 2 dead – Morel Mushrooms suspect
Gallatin City-County Health Department Rescinds Closure Order and Institutes New Health Officer Order with Corrective Actions Required Prior to Dave’s Sushi Reopening
Since being ordered to close on April 20, 2023, food samples – including salmon and morel mushrooms – from Dave’s Sushi have been collected and analyzed. To date, all samples have come back negative for a series of pathogens and toxins. A thorough investigation led by the Gallatin City-County Health Department, with support from the Montana Department of Public Health and Human Services (DPHHS), the Centers of Disease Control and Prevention (CDC), and the Food and Drug Administration (FDA), is still ongoing and it is known that this investigation may not be able to identify a specific pathogen/toxin as a source of the outbreak that impacted 50 people. Three individuals had severe outcomes, including hospitalizations, and the deaths of two individuals are being investigated after eating at the restaurant. The manner and cause of death for these two individuals will remain pending until autopsy and toxicology results are available.
Posted in Death, food bourne outbreak, food death, Food Illness, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Food Poisoning Death, Foodborne Illness, Foodborne Illness Death, foodborne outbreak, foodbourne outbreak, Illness, microbial contamination, Microbial growth, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk, outbreak
RASFF Alerts – Mycotoxin – Aflatoxin – Pistachios – Dried Organic Sliced Figs – Groundnuts – Almonds –
Aflatoxin in Pistachio from IRAN in Italy and Germany
Excessive aflatoxin levels (aflatoxin B1 and total aflatoxin) in dried, sliced organic figs from Turkey in Germany
Aflatoxin in USA groundnuts in the Netherlands
Aflatoxins above the permitted limit in almonds from The United States in Italy
Presence of Aflatoxins beyond the permitted limits in shelled Pistachios from Iran in Italy
Posted in Aflatoxin, Aflatoxin B1, Aspergillus Toxin, food contamination, food handler, Food Hazard, Food Hygiene, Food Inspections, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Testing, Food Poisoning, Food Quality, food recall, Food Safety, Food Safety Alert, Food Safety Management, Food Safety Regulations, Food Testing, Food Toxin, Mold Toxin, Mould Toxin, Mycotoxin, RASFF
RASFF Alert- Mycotoxin – DON – Corn Snacks
Deoxynivalenol (DON) (641,0 ± 97 µg/kg) in corn snacks manufactured in Poland in Austria, Belgium, Germany, Ireland, Netherlands, Northern Ireland, Norway, Poland, United Kingdom
Posted in deoxynivalenol, DON, food contamination, food handler, Food Hazard, Food Hygiene, Food Inspections, Food Microbiology, Food Microbiology Blog, Food Microbiology Testing, Food Poisoning, Food Quality, food recall, Food Safety, Food Safety Alert, Food Safety Management, Food Safety Regulations, Food Testing, Food Toxin, Mold Toxin, Mould Toxin, Mycotoxin, RASFF
RASFF Alerts – Salmonella – Polish Chicken Products – Frozen Turkey Leg Preparation – Halvah – Poultry Neck Skins – Chicken Meat Preparations
Salmonella Enteritidis in chilled/frozen poultry elements from Poland in France
Salmonella Derby in chicken quarters from Poland in France
Salmonella enterica ser. Enteritidis in frozen chicken leg meat from Poland in the Czech Republic
Salmonella detection in Chicken Products from the Netherlands in Ireland
Detection of salmonella typhimuruim in frozen turkey leg preparations from Spain in France
Salmonella in Halvah from Syria in Norway
Salmonella Kottbus in poultry meat from Poland in Bulgaria
Detection of salmonella on poultry neck skins used in the production of spiced free-range chicken meat preparations from France in Luxembourg
Salmonella present in 25g in chicken meat preparation from Thailand in the Netherlands
Posted in food contamination, food handler, Food Hazard, Food Hygiene, Food Inspections, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Testing, Food Pathogen, Food Quality, food recall, Food Safety, Food Safety Alert, Food Safety Management, Food Testing, Polish Chicken Salmonella, RASFF, Salmonella, Salmonella in Chicken, Salmonella Poland, Salmonella Sesame Seeds
RASFF Alert – Hepatitis A – Blueberries
Hepatitis A virus in frozen cultivated blueberries from Poland in Germany
Posted in food contamination, food handler, Food Hazard, Food Hygiene, Food Inspections, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Testing, Food Pathogen, Food Quality, food recall, Food Safety, Food Safety Alert, Food Safety Management, Food Safety Regulations, Food Testing, Food Virus, Hepatitis A, RASFF, Virus
