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Category Archives: Microbiological Risk Assessment
Research – Bacteriocin Production by Escherichia coli during Biofilm Development
Escherichia coli is a highly versatile bacterium ranging from commensal to intestinal pathogen, and is an important foodborne pathogen. E. coli species are able to prosper in multispecies biofilms and secrete bacteriocins that are only toxic to species/strains closely related to the producer strain. In this study, 20 distinct E. coli strains were characterized for several properties that confer competitive advantages against closer microorganisms by assessing the biofilm-forming capacity, the production of antimicrobial molecules, and the production of siderophores. Furthermore, primer sets for E. coli bacteriocins–colicins were designed and genes were amplified, allowing us to observe that colicins were widely distributed among the pathogenic E. coli strains. Their production in the planktonic phase or single-species biofilms was uncommon. Only two E. coli strains out of nine biofilm-forming were able to inhibit the growth of other E. coli strains. There is evidence of larger amounts of colicin being produced in the late stages of E. coli biofilm growth. The decrease in bacterial biomass after 12 h of incubation indicates active type I colicin production, whose release normally requires E. coli cell lysis. Almost all E. coli strains were siderophore-producing, which may be related to the resistance to colicin as these two molecules may use the same transporter system. Moreover, E. coli CECT 504 was able to coexist with Salmonella enterica in dual-species biofilms, but Shigella dysenteriae was selectively excluded, correlating with high expression levels of colicin (E, B, and M) genes observed by real-time PCR. View Full-Text
Posted in Bacteriocin, Biofilm, Decontamination Microbial, E.coli, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Research, Salmonella
Research – Sporadic Occurrence of Enteroaggregative Shiga Toxin–Producing Escherichia coli O104:H4 Similar to 2011 Outbreak Strain
Abstract
We describe the recent detection of 3 Shiga toxin–producing enteroaggregative Escherichia coli O104:H4 isolates from patients and 1 from pork in the Netherlands that were genetically highly similar to isolates from the 2011 large-scale outbreak in Europe. Our findings stress the importance of safeguarding food supply production chains to prevent future outbreaks.
Shiga toxin–producing Escherichia coli (STEC) is a zoonotic pathogen that causes illness ranging from mild diarrhea to haemolytic uremic syndrome and death. During 2011, an exceptionally large outbreak caused by serotype O104:H4 STEC occurred in Europe, mainly in Germany and France, that was associated with sprouts grown from imported fenugreek seeds (1). Besides the ability to produce Shiga toxin, specifically stx2a, the strain had the genetic characteristics and phylogenetic backbone of an enteroaggregative E. coli (EAEC) pathotype (2) but lacked other classical STEC virulence markers eae and hlyA (3). In addition, the outbreak strain carried plasmid-borne blaCTX-M-15 and blaTEM-1 genes. The epidemiologic investigation revealed that a contaminated batch of fenugreek seeds imported into the European Union from Egypt was the most probable source of the pathogen causing the outbreak (4).
After the 2011 outbreak in Germany and France, only a few sporadic cases of infection with Shiga toxin–producing EAEC O104:H4 were reported, most related to travel to Turkey or North Africa (5–8). We describe the sporadic occurrence of Shiga toxin–producing EAEC O104:H4 isolates in the Netherlands, originating from 2 clinical cases from 2019 and 2020 and 1 food isolate from 2017. In addition, we report a clinical case from Austria in 2021.
Posted in Decontamination Microbial, E.coli O104, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Food Pathogen, Haemolytic Uremic Syndrome, HUS, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk, Pathogen, pathogenic, Research, STEC, STEC E.coli, Zoonosis
Sweden – Histamine in fish again – 20 Sick
Meanwhile, 20 people fell sick recently in Sweden due to histamine levels in fish. The foodborne outbreak was linked to tuna from Vietnam.
In April 2021, 19 people were affected by histamine poisoning in Stockholm after eating tuna loins from Vietnam at three different restaurants.
In 2020, there were three outbreaks of histamine poisoning in tuna from Vietnam in three months. These incidents affected about 60 people but contaminated tuna came from different batches. Patients were from different areas in southern and central Sweden.
Sweden – Pasta meal behind 80 illnesses in Sweden – Staphylococcus/Bacillus
Around 80 people got food poisoning from a pasta meal at a soccer tournament this past month in Sweden.
An investigation into the incident in Gammelstad on Aug. 5 revealed people fell ill after eating spaghetti bolognese from a restaurant in the city of Luleå.
Testing of the bolognese left at the restaurant was found to be satisfactory. Samples were also taken in Gammelstad where serving took place. High levels of bacteria were detected in the pasta, plus the presence of toxins that can cause food poisoning. Food had been left at room temperature for some time after serving, which provided an opportunity for bacterial growth.
Bacillus cereus and Staphylococcus aureus were found in the pasta meal. Symptoms experienced by those sick matched what would be expected with such contamination.
Posted in Bacillus, Bacillus cereus, Bacterial Toxin, Food Illness, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Food Poisoning, Food Toxin, Foodborne Illness, Illness, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk, Poisoning, Staphylococcus aureus
Research – First Description of a Yersinia pseudotuberculosis Clonal Outbreak in France, Confirmed Using a New Core Genome Multilocus Sequence Typing Method
Yersinia pseudotuberculosis is an enteric pathogen causing mild enteritis that can lead to mesenteric adenitis in children and septicemia in elderly patients. Most cases are sporadic, but outbreaks have already been described in different countries. We report for the first time a Y. pseudotuberculosis clonal outbreak in France, that occurred in 2020. An epidemiological investigation based on food queries pointed toward the consumption of tomatoes as the suspected source of infection. The Yersinia National Reference Laboratory (YNRL) developed a new cgMLST scheme with 1,921 genes specific to Y. pseudotuberculosis that identified the clustering of isolates associated with the outbreak and allowed to perform molecular typing in real time. In addition, this method allowed to retrospectively identify isolates belonging to this cluster from earlier in 2020. This method, which does not require specific bioinformatic skills, is now used systematically at the YNRL and proves to display an excellent discriminatory power and is available to the scientific community. IMPORTANCE We describe in here a novel core-genome MLST method that allowed to identify in real time, and for the first time in France, a Y. pseudotuberculosis clonal outbreak that took place during the summer 2020 in Corsica. Our method allows to support epidemiological and microbiological investigations to establish a link between patients infected with closely associated Y. pseudotuberculosis isolates, and to identify the potential source of infection. In addition, we made this method available for the scientific community.
Auteur : Savin Cyril, Le Guern Anne-Sophie, Chereau Fanny, Guglielmini Julien, Heuzé Guillaume, Demeure Christian, Pizarro-Cerdá Javier
Microbiology spectrum, 2022, p. e0114522
Posted in food bourne outbreak, food contamination, food handler, Food Hazard, Food Hygiene, Food Illness, Food Inspections, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Food Pathogen, Food Safety, Food Safety Management, Food Testing, Foodborne Illness, foodborne outbreak, foodbourne outbreak, Illness, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk, MLST, outbreak, Yersinia, Yersinia pseudotuberculosis
USA – More people sick as outbreak linked to Wendy’s spreads to 2 more states
Another 13 people have been confirmed sick in an outbreak of E. coli O157:H7 infections linked to lettuce on sandwiches from Wendy’s restaurants. Two states have been added to the outbreak.
Half of the 97 outbreak patients have been so sick that they had to be admitted to hospitals. Of the 43 hospitalized people, 10 have developed a kind of kidney failure known as hemolytic uremic syndrome (HUS), according to the Centers for Disease Control and Prevention.
Among the 67 people with detailed food histories, 81 percent reported eating at Wendy’s restaurants. Of 54 people with further information about what they ate at Wendy’s, 37 reported eating romaine lettuce served on burgers and other sandwiches.
Posted in food bourne outbreak, Food Illness, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Testing, Foodborne Illness, foodborne outbreak, foodbourne outbreak, Illness, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk, outbreak, STEC, STEC E.coli
RASFF Alert – Food Poisoning – Raw Oysters
Food poisoning after eating oysters from France in Germany, Belgium, Finland and Netherlands
Posted in food bourne outbreak, Food Illness, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Testing, Food Poisoning, Foodborne Illness, foodborne outbreak, foodbourne outbreak, Illness, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk, outbreak, Poisoning, RASFF, raw oysters
RASFF Alerts – Animal Feed – Salmonella – Soybean Extraction Meal – Wheat Feed – Barley Feed
Salmonella spp. in soybean extraction meal from Germany in Switzerland and Netherlands
Salmonella enterica ser. Senftenberg in soybean meal from Russia, via Luxembourg in Sweden
Salmonella Infantis in wheat feed from Poland in Finland
Salmonella Enteritidis in barley feed from Spain in Finland
Research – An outbreak of cryptosporidiosis associated with drinking water in north-eastern Italy, August 2019: microbiological and environmental investigations

The enteric parasite Cryptosporidium, along with norovirus, Giardia, Campylobacter and rotavirus, is among the most frequent causes of waterborne disease [1,2]. In humans, transmission of Cryptosporidium occurs via the faecal-oral route, either through direct exposure to infected people (person-to-person infection) or animals (animal-to-person infection), or through ingestion of water (drinking water, recreational water such as swimming pools, water parks, lakes, rivers) or consumption of raw or undercooked food contaminated with infectious oocysts [3]. Infection may remain asymptomatic or manifest as acute gastroenteritis (> 80% of infected individuals). Symptoms occur 1 to 12 days (mean: 7 days) after exposure and usually last 6 to 9 days. The severity and duration of symptoms are linked to the immune status of the host, and cryptosporidiosis can be life threatening in immunosuppressed individuals [4].
There are many Cryptosporidium species that can infect humans, but the vast majority of cases are due to Cryptosporidium parvum, a zoonotic species that also infects young ruminants, and Cryptosporidium hominis, which is essentially only a human pathogen [5]. The environmental route of transmission is of high relevance for Cryptosporidium [6]. This is due to several factors including: (i) the high survival rate of oocysts in water (more than 24 months at 20°C), (ii) high resistance to disinfection (30 mg/L of free chlorine are needed to achieve 99% inactivation at pH 7, with a recommended value of 0.2 mg/L for drinking water) [6], (iii) low infectious dose (10–132 oocysts in healthy adults [7]) and (iv) low host specificity [5]. Oocysts lose their infectivity when frozen, boiled or heated over 60°C [6].
The ability of Cryptosporidium to survive at high chlorine concentrations [8] and, consequently, at the disinfectant concentrations commonly used in water treatment, has always been a challenge for water treatment plant operators. However, other disinfectants, such as chlorine dioxide, ozone, UV rays and filtration have proved to be rather effective in removing Cryptosporidium. Water safety mainly depends on the combination of different treatment stages, and a multi-barrier approach is a key paradigm for ensuring safe drinking water [6]. Nonetheless, in small water supplies managed by local communities that serve only few thousand people, multi-barrier treatment systems are usually not implemented. Thus, in order to ensure the safety of drinking water, more traditional treatments, e.g. disinfection, are used and water quality is checked against certain regulatory parameters.
During 2017–20, 60 waterborne outbreaks of cryptosporidiosis have been detected in Europe, the majority of which involving treated recreational water (swimming pools) as the vehicle of infection [9]. The number of outbreaks linked to contaminated drinking water has shown a notable decrease in the past decades, although, when occurring, large numbers of individuals may be involved, as exemplified by the outbreaks reported in 2010–11 in Sweden [10,11].
Posted in Contaminated water, Cryptosporidiosis, Cryptosporidium, Decontamination Microbial, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk, Research, Water, water microbiology, Water Safety
FDA – Core Outbreak Table – Investigations of Foodborne Illness Outbreaks
What’s New
- An outbreak of Salmonella Mississippi (ref# 1097) in a not yet identified product has been added to the table and FDA has initiated traceback.
- For the E. coli O157:H7 outbreak (ref# 1081) in a not yet identified food, sample collection and analysis have been initiated.
- For the Salmonella Senftenberg outbreak (ref# 1087) in a not yet identified food, the case count has increased from 22 to 25 cases.
- For the Salmonella Typhimurium outbreak (ref# 1095) in a not yet identified food, the case count has increased from 62 to 73 cases, an on-site inspection and sample collection and analysis has been initiated.
- For the Cyclospora outbreak (ref# 1080) the case count has increased from 70 to 75.
- For the Cyclospora outbreak (ref# 1084), the case count has increased from 41 to 42.
- For the Salmonella Braenderup outbreak (ref# 1075), the case count increased from 74 to 75.
- For the outbreak of Listeria monocytogenes (ref# 1057) linked to ice cream, FDA initiated an on-site inspection.
Posted in Cyclospora, Cyclosporiasis, E.coli O157, E.coli O157:H7, FDA, food bourne outbreak, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, foodborne outbreak, foodbourne outbreak, Listeria, Listeria monocytogenes, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Microbiology Risk, outbreak, Salmonella


