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Category Archives: Food Microbiology Research
Research – Best Practice for the Control of Human Pathogenic Microorganisms in Plant Production Systems
There is an increased emphasis on and observance of food-borne diseases associated with fresh produce, due in part to changes in the processing, agronomy and distribution of fresh produce but also in the increasing trend for the consumption of minimally processed and raw, ready-to-eat crops. A recent meeting of European experts and commercial growers, assembled under the HuPlant Cost Action assessed the current European situation in relation to the safety of horticultural produce under the themes of
(1) protecting fresh produce from microbial pathogens,
(2) control strategies and sampling and
(3) risk assessment and risk based sampling.
The following report details the discussions and observations which emanated from that meeting, including a list of recommendations, aimed at
(1) Growers,
(2) Regulators and Advisors and
(3) Scientists.
For growers recommendations include reinforcement through clear communication on the need to prevent initial contamination of produce through the adoption of good microbiological safety practice, utilising on farm risk assessments and a focus on avoidance of initial contamination rather than a reliance on decontamination efforts.
This can be achieved through approaches such as the adoption and incorporation of good agricultural practice and good hygiene into standard operating procedures on farm. Recommendations to regulators and advisors include balancing communication messages to growers, indicating what is required of them, but also equally, clearly explaining why it is necessary.
Additionally it was felt that additional supports and materials could be made available to growers, particularly to smaller growers, to assist in the training of staff on the importance of biological safety practice, particularly in sectors where staff turnover may be high and differences in the native languages spoken.
Finally recommendations to scientists include a greater emphasis on knowledge transfer and also to, where possible focus knowledge transfer efforts into developing clear recommendations which growers can implement. The interaction between the plant microbiome, potential pathogens, environmental conditions and agricultural practices requires a greater level of attention and research to aid in predict the risk of human pathogen establishment.
Overall it was recognised that through increased interaction and information exchange between stakeholders will enable better understanding of the issues and opportunities faced by the horticultural sector and the co-creation of advice through participation of all stakeholders can assist in reducing the risk of contamination of horticultural produce.
Posted in Decontamination Microbial, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Food Pathogen, Food Technology, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Pathogen, pathogenic, Research, Technology
Research – Control of Bacillus weihenstephanensis in Pasteurized Liquid Whole Eggs Formulated with Nisin
Bacillus weihenstephanensis can grow at refrigeration temperature and cause food poisoning. It has been isolated from liquid whole egg products. The moderate heat used for pasteurization of liquid egg products is ineffective for killing spore-forming bacteria including Bacillus. Available predictive models and a pretrial study in broth suggested the potential for growth of Bacillus spp. under the tested conditions. Hence, hurdles such as storage of product below 4°C or use of preservatives would be needed to ensure the food safety of pasteurized egg products. This study evaluated the growth inhibition of B. weihenstephanensis in pasteurized liquid whole egg product formulated with 6.25 ppm nisin during storage at refrigerated and abuse refrigerated temperatures for a total 13 weeks, in three replicate trials. At day 0, the product had a pH of 7.52±0.29, while background microflora such as aerobic plate counts, presumptive B. cereus, and yeast and molds were <10 CFU/g. Product inoculated with target 2.5 log10 CFU/g of B. weihenstephanensis, stored at 4°C for 4 weeks and subsequently at 7 or 10°C for 9 weeks exhibited no growth in all three replicate trials. Average counts reduced (p<0.05) by at least one-log10 in six weeks in all samples stored at either 7 or 10°C. Similarly, growth of total plate counts, presumptive Bacillus spp., yeast and mold counts was not observed in uninoculated controls stored at 4°C for 4 weeks and subsequently at 7 or 10°C for 9 weeks. Visual and odor evaluation performed at each sampling time point showed no abnormalities. This study assessed the efficacy of maximum allowed level of nisin for use in pasteurized liquid whole eggs and validated the inhibition of B. weihenstephanensis in the product for an extended shelf life of up to 13 weeks.
Posted in Bacillus, Bacillus weihenstephanensis, Decontamination Microbial, Food Micro Blog, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Food Technology, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Research, Technology
Research – Prevalence and patterns of fecal shedding of Shiga toxin–producing Escherichia coli by cattle at a commercial feedlot in South Africa
Healthy colonized cattle are the major reservoir of Shiga toxin–producing Escherichia coli (STEC) and play a key role in the entry point of the pathogen into the beef chain. Excretion rates and the concentration of the pathogen in feces influence the epidemiology and transmission of the pathogen within herds and to humans. This study evaluated the prevalence and dynamics of fecal shedding of STEC by cattle in a commercial feedlot in Gauteng, South Africa. An initial cross-sectional survey was conducted; fecal samples were obtained from 106 randomly selected weaned beef calves on arrival at the feedlot using polymerase chain reaction (PCR) to screen by detecting stx1 and stx2 genes. Subsequently, a longitudinal study was conducted, and 15 STEC-positive and 11 STEC-negative cattle were sampled monthly and followed to slaughter. STEC O157 and non-O157 were enumerated in samples using commercial chromogenic agar. Initial prevalence of STEC shedding was 27% (29/106; 95% CI [19, 37%]). All 26 cattle shed STEC intermittently or continuously during the study period, all except one were super-shedders (≥4 log10 CFU/g) at one or more samplings, and 19 (73%) were persistent or intermittent super-shedders. Of the 38 STEC isolates recovered, 15 (39%) were serotypeable, representing 11 non-O157 serogroups, including O101, O168, O178, and O68. The most frequent virulence combination profile was stx1 + eaeA + ehxA (n = 12; 32%). This study confirms the occurrence and variability of STEC super-shedding in feedlot cattle and highlights that super-shedding is not limited to STEC O157. It also shows their public health significance.
Research – Evaluation of Salmonella Biofilm Cell Transfer from Common Food Contact Surfaces to Beef Products
Meat contamination by Salmonella enterica is a serious public health concern. Available studies have suggested that biofilm formation at processing plants and the contaminated contact surfaces might contribute to meat contamination. Since bacteria transfer from contact surfaces to food products via direct contact has been deemed as the most common transmission route that could lead to contamination, we evaluated the effect of Salmonella biofilm forming ability, contact surface materials, and beef surface tissue types on Salmonella biofilm transfer from hard surfaces to beef products. Salmonella biofilms developed on common contact surface stainless steel (S.S) and polyvinylchloride (P.V.C) were transferred consecutively via direct contacts of 30 sec each to either lean muscle or adipose tissue surfaces of 15 pieces of beef trim. Our results showed that Salmonella biofilm cells could be effectively transferred multiple times from contact surface to beef trim as enumerable Salmonella cells could be detected on most of the meat samples. Bacterial biofilm forming ability had the most significant impact (p<0.05) on transfer efficiency as the strong biofilm forming strains not only transferred higher amounts of bacteria after each contact, but also contaminated more meat samples with enumerable Salmonella cells compared to the weak biofilm formers. Contact surface materials could affect transferability as Salmonella biofilms on S.S surface appeared to transfer more efficiently compared to those on P.V.C surface. Conversely, the two types of meat surface tissues showed no significant difference (p>0.05) on biofilm transfer efficiency. Furthermore, biofilm – contacted beef trim without enumerable Salmonella cells all exhibited positive Salmonella prevalence after enrichment. Our study demonstrated the high potential of Salmonella biofilms on common contact surfaces to cause product cross contamination in meat processing plants.
Research – Survival of Salmonella Typhimurium and Escherichia coli O157:H7 on blueberries and impacts on berry quality during 12 weeks of frozen storage after washing with combinations of sodium dodecyl sulfate and organic acids or hydrogen peroxide
Salmonella spp. and Escherichia coli are well tolerant of freezing. This study was to investigate survival of the foodborne pathogens during storage at −18 ± 2°C for 12 weeks on blueberries after washing with: 500 ppm acetic acid plus 5,000 ppm sodium dodecyl sulfate (SDS) (AA/SDS), 20 ppm peroxyacetic acid plus 5,000 ppm SDS (PPA/SDS), or 200 ppm hydrogen peroxide plus 5,000 ppm SDS (H2O2/SDS), when compared with findings from no wash, or wash with water, 80 ppm PPA or 200 ppm chlorinated water. Following a 60 s contact with one of the three new solutions, the treatments showed 3.3–3.9 log10 CFU/g reductions in Salmonella Typhimurium and E. coli O157:H7 counts. After 2 weeks of frozen storage, 3.9–4.2 log10 CFU/g reductions of Salmonella and E. coli were observed. After 12 weeks of frozen storage, Salmonella and E. coli survivors were below detection limits (0.39 log10 CFU/g) in berries washed with new solutions. The frozen storage had a significant impact (p < .05) on microbial counts of both treated and nontreated blueberries. Although none of these washings decreased the total phenolic and anthocyanins contents and apparent quality at time 0, frozen storage caused significant damage on the texture of both treated and nontreated blueberries. Interestingly, no significant decrease in the total phenolic, anthocyanins content, and apparent quality was observed during the 12-week frozen storage. The counts of total bacteria, yeasts, and molds decreased throughout storage for treated and untreated berries. This demonstrates that the three wash solutions enhance the safety of frozen berries.
Posted in Decontamination Microbial, E.coli, E.coli O157, E.coli O157:H7, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Food Technology, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Research, Salmonella
Research – Effect of domestic freezing on the viability of Toxoplasma gondii in raw and dry-cured ham from experimentally infected pigs
Toxoplasma gondii is the causative agent of the parasitic disease toxoplasmosis, which is an important food borne zoonosis. Eating undercooked meat of infected animals has been considered the major transmission route of T. gondii to humans. The present study evaluates the efficacy of domestic freezing on the inactivation of T. gondii bradyzoites in raw and dry-cured ham. Meat (raw and dry-cured ham) of a pig experimentally orally inoculated with 4,000 oocysts of T. gondii VEG strain was subjected to domestic freezing of -20 ºC at different days. The effect was evaluated by bioassay in mice followed by qPCR. In raw ham and dry-cured ham, temperature of -20 ºC for 7 and 14 days respectively did not inactivate T. gondii . More studies are needed to find the right temperature and time needed to render the bradyzoites non-infectious for human. Meanwhile, the recommendations of freezing to inactivate T. gondii in raw or dry-cured meats must be revisited considered that it does not reduce the risk of infection.
Research – Lactic Acid Bacteria as Antimicrobial Agents: Food Safety and Microbial Food Spoilage Prevention

In the wake of continual foodborne disease outbreaks in recent years, it is critical to focus on strategies that protect public health and reduce the incidence of foodborne pathogens and spoilage microorganisms. Currently, there are limitations associated with conventional microbial control methods, such as the use of chemical preservatives and heat treatments. For example, such conventional treatments adversely impact the sensorial properties of food, resulting in undesirable organoleptic characteristics. Moreover, the growing consumer advocacy for safe and healthy food products, and the resultant paradigm shift toward clean labels, have caused an increased interest in natural and effective antimicrobial alternatives. For instance, natural antimicrobial elements synthesized by lactic acid bacteria (LAB) are generally inhibitory to pathogens and significantly impede the action of food spoilage organisms. Bacteriocins and other LAB metabolites have been commercially exploited for their antimicrobial properties and used in many applications in the dairy industry to prevent the growth of undesirable microorganisms. In this review, we summarized the natural antimicrobial compounds produced by LAB, with a specific focus on the mechanisms of action and applications for microbial food spoilage prevention and disease control. In addition, we provide support in the review for our recommendation for the application of LAB as a potential alternative antimicrobial strategy for addressing the challenges posed by antibiotic resistance among pathogens. View Full-Text
Posted in antimicrobial resistance, Antimicrobials, Decontamination Microbial, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Food Technology, LAB, lactic acid bacteria, Lactobacillus, Lactobacillus plantarum, Lactobacillus rhamnosus, Lactobacillus sakei, Lactobacillus saki, Lactococcus, microbial contamination, Microbiological Risk Assessment, Microbiology, Research
EU – Europe Increases Checks on Melons after Salmonella Outbreak
The European Commission has tightened the rules around imports of Galia melons from Honduras because of a recent Salmonella outbreak.
Emergence of a risk to human health because of possible Salmonella Braenderup contamination means official controls are to be increased with identity and physical checks on 10 percent of consignments entering the EU beginning Jan. 6.
The multi-country outbreak of Salmonella Braenderup that affected more than 350 people was traced to Galia melons from Honduras. Four people were sick in the United States and two in Canada. The UK was the most affected but ill people were also from Sweden, Belgium, Germany, Denmark, Netherlands, Switzerland, Austria, Czech Republic, Finland, France, Ireland, Luxembourg and Norway.
A sample of Salmonella Braenderup that matched the outbreak strain was found on the surface of a washing tank in one of the Honduran facilities where Galia melons were packed. The harvest season started again this month.
However, authorities in Honduras said the cause cannot be confirmed to be Galia melons from the country because a case was reported in July 2021 in Denmark, and no melons from Honduras were exported at that time.
The updated regulation temporarily changes the rate of official controls and puts emergency measures on entry into the EU of certain goods from some non-EU countries. Rules are modified every six months to account for new information on risks to health and non-compliance with EU legislation.
Posted in food bourne outbreak, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, foodborne outbreak, foodbourne outbreak, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, outbreak, Research, Salmonella
Czech Republic – Döner classic – Campylobacter
Place of inspection:
ID: 09676902
Unsatisfactory parameter:
Campylobacter spp.
The product has been found to contain the pathogenic bacterium Campylobacter spp ., Which causes diarrheal disease. The food was evaluated as harmful to health
| Quantity of product in package: | 1 pc |
| Producer: | SRI LAK sro, Spálená 101/37, Prague 110 00 |
| Sampling date: | Aug 23, 2021 |
| Reference number: | 21-000563-CAFIA-CZ |
The sample was found by an official inspection of the State Agricultural and Food Inspection Authority.
Posted in Campylobacter, Campylobacter jejuni, food contamination, food handler, Food Hazard, Food Hygiene, Food Inspections, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Food Pathogen, food recall, Food Safety, Food Safety Alert, Food Testing
Research – A Naturally Derived Nanocomposite Film with Photodynamic Antibacterial Activity: New Prospect for Sustainable Food Packaging

Food packaging with efficient antibacterial ability is highly desirable and challenging in facing the crisis of microbial contamination. However, most present packaging is based on metal-based antibacterial agents and requires a time-consuming antibacterial process. Here, the unique packaging (CC/BB films) featuring aggregation-induced emission behavior and photodynamic inactivation activity is prepared by dispersing self-assembled berberine–baicalin nanoparticles (BB NPs) into a mixed matrix of sodium carboxymethylcellulose-carrageenan (CC). The superiority of this design is that this packaging film can utilize sunlight to generate reactive oxygen species, thus eradicating more than 99% of E. coli and S. aureus within 60 min. Also, this film can release BB NPs to inactivate bacteria under all weather conditions. Surprisingly, the CC/BB nanocomposite film presented excellent mechanical performances (29.80 MPa and 38.65%), hydrophobicity (117.8°), and thermostability. The nanocomposite film is validated to be biocompatible and effective in protecting chicken samples, so this work will provide novel insights to explore safe and efficient antibacterial food packaging.
Posted in Decontamination Microbial, E.coli, Food Micro Blog, Food Microbiology, Food Microbiology Blog, Food Microbiology Research, Food Microbiology Testing, Food Technology, microbial contamination, Microbiological Risk Assessment, Microbiology, Microbiology Investigations, Research, Staphylococcus aureus, Technology

