Category Archives: Research

UK – Shiga toxin-producing Escherichia coli: guidance, data and analysis

Gov UK

Shiga toxin-producing Escherichia coli (STEC), previously known as Vero cytotoxin-producing Escherichia coli (VTEC), are a group of bacteria that cause infectious gastroenteritis. Historically the most frequently reported STEC strain to cause illness in England was STEC O157; however, in recent years reports of non-O157 STEC infections have increased. In England around 1,500 cases of STEC (O157 and non-O157) are reported each year.

Symptoms can range from mild gastroenteritis through to severe bloody diarrhoea.

Sometimes people with STEC infection can develop haemolytic uraemic syndrome (HUS), a serious condition affecting the blood, kidneys, and the central nervous system, which can also result in death.

The main reservoir for STEC is cattle and other ruminants. Transmission to humans occurs through:

  • consumption of contaminated food or water
  • contact with animals or their faeces
  • contact with a contaminated environment
  • person-to-person spread, often resulting in multiple people in one household becoming infected

Outbreaks of STEC occur every year. UKHSA uses whole genome sequencing to identify groups of people with the same strain of STEC and then investigates these outbreaks at the national level with partner agencies. This enables controls to be implemented and stops more people becoming unwell. Most large outbreaks of STEC are foodborne, commonly identified food vehicles include meat (for example, under-cooked burgers), salad vegetables or dairy products.

For guidance on other non-STEC E. coli infections, see Escherichia coli (E. coli): guidance, data and analysis.

Research – Battling bacterial biofilms: Winning the war against stubborn microbes

Food Safety News

Imagine a group of bacteria teaming up like a gang, creating a fortress around them. This is essentially what bacterial biofilms are – a tough, sticky barrier that makes them incredibly difficult to defeat. They form on medical devices, water pipes, kitchen surfaces, and even in our bodies, leading to persistent infections and contamination. In the food industry, bacterial biofilms formed on food and non-food contact surfaces are associated with many foodborne outbreaks.

Once attached to surfaces, biofilms can remain for long periods, ranging from days to years. A recent scientific study indicated that Listeria monocytogenes biofilms persisted for 17 years on contact surfaces in a seafood processing environment (see below for further reading). Although this formidable microbial community is resistant to chemical, physical, or biological treatments, there are proven ways to deal with them.

Research – The Relationship between Biofilm Phenotypes and Biofilm-Associated Genes in Food-Related Listeria monocytogenes Strains

MDPI

Listeria monocytogenes is an important pathogen responsible for listeriosis, a serious foodborne illness associated with high mortality rates. Therefore, L. monocytogenes is considered a challenge for the food industry due to the ability of some strains to persist in food-associated environments. Biofilm production is presumed to contribute to increased L. monocytogenes resistance and persistence. The aims of this study were to (1) assess the biofilm formation of L. monocytogenes isolates from a meat processing facility and sheep farm previously characterized and subjected to whole-genome sequencing and (2) perform a comparative genomic analysis to compare the biofilm formation and the presence of a known set of biofilm-associated genes and related resistance or persistence markers. Among the 37 L. monocytogenes isolates of 15 sequence types and four serogroups involved in this study, 14%, 62%, and 24% resulted in the formation of weak, moderate, and strong biofilm, respectively. Increased biofilm-forming ability was associated with the presence of the stress survival islet 1 (SSI-1), inlL, and the truncated inlA genes. Combining the phenotypic and genotypic data may contribute to understanding the relationships between biofilm-associated genes and L. monocytogenes biofilm-forming ability, enabling improvement in the control of this foodborne pathogen.

UK – FSA assesses raw pet food risk to animals and people

Food Safety News

The Food Standards Agency (FSA) has analyzed the risk to dogs and cats from eating contaminated raw pet food and the impact on the people who feed them such products.

Raw pet food has become increasingly popular in recent years. Such items are made from Category 3 Animal-By-Products (ABP) that have been passed fit for human consumption in a slaughterhouse but are surplus to requirements. They do not undergo cooking or heat treatment so that the end product can be contaminated with pathogens. The majority are sold frozen and typically have a best-before date of over one year.

The assessment considers the risk of dogs and cats acquiring Salmonella, beta-glucuronidase-positive E. coli, Shiga toxin-producing E. coli (STEC), Campylobacter, and methicillin-resistant Staphylococcus aureus (MRSA) infection from contaminated products. It also covers the risk of infection to animal owners by handling these products at home or via transmission from an infected pet.

Research – Salmonellosis

Sante Publique

Non-typhoidal salmonellosis is an infectious disease caused by salmonella that infects the digestive tract. It is usually characterized by gastrointestinal disorders.

Research – Avoiding Food Poisoning: How a Tiny Chip Can Make Your Food Safer Than Ever

Scitech Daily

A new microfluidic chip developed by researchers enables quick, effective detection of multiple foodborne pathogens simultaneously, improving food safety and preventing contaminated products from entering the market.

Every so often, a food product is recalled because of some sort of contamination. For consumers of such products, a recall can trigger doubt in the safety and reliability of what they eat and drink. In many cases, a recall will come too late to keep some people from getting ill.

In spite of the food industry’s efforts to fight pathogens, products are still contaminated and people still get sick. Much of the problem stems from the tools available to screen for harmful pathogens, which are often not effective enough at protecting the public.

Research – Botulism: a mimic for brainstem strokes and Miller Fisher syndrome

MJA

Clinical record

A 61‐year‐old man with moderate stroke risk factors, including hypertension and hyperlipidaemia, presented with rapidly progressive ptosis, diplopia, ataxia and dysarthria. No infective prodrome or suspected food poisoning was initially disclosed. Given this presentation, brainstem stroke was the primary differential diagnosis.

On Day 2, he developed vomiting, dysphagia and severe respiratory distress, requiring intubation. He subsequently developed complete ophthalmoplegia, descending flaccid paralysis and required ventilation. A differential diagnosis of Miller Fisher syndrome was then considered. Sequential intravenous immunoglobulin and plasma exchanges were minimally effective. Cerebrospinal fluid analysis was unremarkable with no raised protein levels. Test results for anti‐ganglioside antibodies, including anti‐GQ1‐b (both IgG and IgM), were negative. Nerve conduction studies and electromyogram (performed on Day 4) results confirmed a generalised, predominantly motor neuropathy (Box 1 and Box 2). Results from the magnetic resonance imaging (MRI) scan of the brain and spine/plexus with contrast were normal.

Box 1

Day 4 results from the nerve conduction study and electromyogram suggesting a severe motor predominant neuropathy with relative sensory sparing (likely too early to appreciate muscle denervation)

Box 2

Day 88 results from the nerve conduction study and electromyogram showing persisting generalised reduction in upper and lower limb motor amplitudes, (although improving), with relative sparing of sensory responses

Further history on Day 15 revealed that the patient had consumed foul‐tasting almond milk 12–36 hours prior to symptom onset. The differentials then expanded to include botulism. Following consultation with the infectious diseases department, further tests were requested. Clostridium botulinum culture and test results for toxin A‐G nucleic acid were negative on retained milk sample and stool. The results from the C. botulinum direct toxin test using the mouse bioassay (pooled antitoxin A, B and E) demonstrated the presence of botulinum toxin in a retained sample of the milk. The FilmArray BioThreat Panel (BioFire Defense) test on a retained sample of milk detected botulinum toxin A nucleic acid. After guidance from infectious diseases and public health authorities on Day 16, the patient was administered botulin antitoxin obtained from the National Medical Stockpile. The implicated milk product was subsequently recalled. The patient was weaned off mechanical ventilation five months after admission to the intensive care unit.

USA – Food safety in season at farmers markets

Food Safety News

Farmers Market season is in full swing, and shoppers are out in full force.  Smiles are abundant, and for good reason. From watermelons in Texas to fresh greens in the northern climes, this is the season that puts local agriculture in the spotlight.

Food safety is also in the spotlight. At a recent farmers market in Mount Vernon, WA, Jack and Mary Kay Going, who were going home with some micro-greens and lettuce, said that freshness rates high on their food-safety list. They also like to buy from farmers who specialize in what they’re selling. Cleanliness is another important “must” they look for. “The sellers should definitely have clean hands,” said Jack. “Definitely,” said Mary Kay, enthusiastically agreeing with her husband.

Over at Lopez Brothers Farms, Abi Merino and Jose Lopez were doing a brisk business selling berries and three kinds of cherries. Both were wearing gloves as they filled various sized baskets according to customers’ preferences.

Research – A novel approach to identify critical knowledge gaps for food safety in circular food systems

Nature

The transition from linear production towards a circular agro-food system is an important step towards increasing Europe’s sustainability. This requires re-designing the food production systems, which inevitably comes with challenges as regards controlling the safety of our food, animals and the ecosystem. Where in current food production systems many food safety hazards are understood and well-managed, it is anticipated that with the transition towards circular food production systems, known hazards may re-emerge and new hazards will appear or accumulate, leading to new -and less understood- food safety risks. In this perspective paper, we present a simple, yet effective approach, to identify knowledge gaps with regard to food safety in the transition to a circular food system. An approach with five questions is proposed, derived from current food safety management approaches like HACCP. Applying this to two cases shows that risk assessment and management should emphasize more on the exposure to unexpected (with regards to its nature and its origin) hazards, as hazards might circulate and accumulate in the food production system. Five knowledge gaps became apparent: there’s a need for (1) risk assessment and management to focus more on unknown hazards and mixtures of hazards, (2) more data on the occurrence of hazards in by-products, (3) better understanding the fate of hazards in the circular food production system, (4) the development of models to adequately perform risk assessments for a broad range of hazards and (5) new ways of valorization of co-products in which a safe-by-design approach should be adopted.

Research – Spatial Chromosome Organization and Adaptation of Escherichia coli under Heat Stress

MDPI

Abstract

The spatial organization of bacterial chromosomes is crucial for cellular functions. It remains unclear how bacterial chromosomes adapt to high-temperature stress. This study delves into the 3D genome architecture and transcriptomic responses of Escherichia coli under heat-stress conditions to unravel the intricate interplay between the chromosome structure and environmental cues. By examining the role of macrodomains, chromosome interaction domains (CIDs), and nucleoid-associated proteins (NAPs), this work unveils the dynamic changes in chromosome conformation and gene expression patterns induced by high-temperature stress. It was observed that, under heat stress, the short-range interaction frequency of the chromosomes decreased, while the long-range interaction frequency of the Ter macrodomain increased. Furthermore, two metrics, namely, Global Compactness (GC) and Local Compactness (LC), were devised to measure and compare the compactness of the chromosomes based on their 3D structure models. The findings in this work shed light on the molecular mechanisms underlying thermal adaptation and chromosomal organization in bacterial cells, offering valuable insights into the complex inter-relationships between environmental stimuli and genomic responses.