The European Food Safety Authority and the European Centre for Disease Prevention and Control analysed information submitted by 27 European Union Member States on the occurrence of zoonoses and food-borne outbreaks in 2012. Campylobacteriosis was the most commonly reported zoonosis, with 214,268 confirmed human cases. The occurrence of Campylobacter continued to be high in broiler meat at EU level. The decreasing trend in confirmed salmonellosis cases in humans continued with a total of 91,034 cases reported in 2012. Most Member States met their Salmonella reduction targets for poultry. In foodstuffs, Salmonella was most often detected in meat and products thereof. The number of confirmed human listeriosis cases increased to 1,642. Listeria was seldom detected above the legal safety limit from ready-to-eat foods. A total of 5,671 confirmed verocytotoxigenic Escherichia coli (VTEC) infections were reported. VTEC was also reported from food and animals. The number of human tuberculosis cases due to Mycobacterium bovis was 125 cases, and 328 cases of brucellosis in humans were reported. The prevalence of bovine tuberculosis in cattle increased, and the prevalence of brucellosis in cattle, sheep or goats decreased. Trichinella caused 301 human cases and was mainly detected in wildlife. One domestically acquired human case and one imported human case of rabies were reported. The number of rabies cases in animals increased compared with 2011. A total of 643 confirmed human cases of Q fever were reported. Almost all reporting Member States found Coxiella burnetii (Q fever) positive cattle, sheep or goats. A total of 232 cases of West Nile fever in humans were reported. Nine Member States reported West Nile virus findings in solipeds. Most of the 5,363 reported food-borne outbreaks were caused by Salmonella, bacterial toxins, viruses and Campylobacter, and the main food sources were eggs, mixed foods and fish and fishery products.